TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Infestans
         (633 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   421   e-118
gb|GL349436.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   336   3e-92

>gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.22,
              whole genome shotgun sequence
          Length = 456871

 Score =  421 bits (1083), Expect = e-118
 Identities = 261/626 (41%), Positives = 359/626 (57%), Gaps = 11/626 (1%)
 Frame = +2

Query: 19     LPSSRFDNAVLRELPIDTEPKNFV--RSAVSGACFSRVDPTPIASPELVVTSPNSLLLVG 76
              L S +++N+ +  LP + EP      +  V GACF+   PTP+ASP LV  S ++L L+G
Sbjct: 136466 LESLQWENSCVTSLPYEAEPPPGAPAQREVVGACFAAAAPTPVASPRLVAYSRSALALLG 136645

Query: 77     IELNESDSKSQDEGVNGEGDDLQPIETLVPILAGNTLLPGAETAAQCYCGHQFGFFSGQL 136
              I     D  +    V    DD         + AGN +  GA  AA CYCG QFG+FSGQL
Sbjct: 136646 I-----DQDALAASVATNRDDA------AAVFAGNVVPAGASPAAHCYCGFQFGYFSGQL 136792

Query: 137    GDGAALYLGEVVAVDE-RWELQLKGSGLTPYSRTADGRKVLRSTLREFLCSENMHALGVP 195
              GDGA +YLGE V     R E+Q KG+G TP+SRTADGRKVLRS+LREF+ SE M ALG+P
Sbjct: 136793 GDGATMYLGETVGGPAGRMEIQYKGAGKTPFSRTADGRKVLRSSLREFIASEAMAALGIP 136972

Query: 196    TTRAGSVVTSKETQVLRDIFYNGDAKMEPTAVVTRIAKSFLRFGSFEIFKDEDKLTGLAG 255
              TTRAGS+V S +T V+RD+FY+G+  MEP AV+TR+A SFLRFGSFEI + ED++TG AG
Sbjct: 136973 TTRAGSLVVS-DTYVVRDVFYDGNPAMEPAAVITRLAPSFLRFGSFEICRSEDEVTGRAG 137149

Query: 256    PSAHLENKEEMMREMLDFTIRQYYSEISGA-RKYEKFFQEVVRRTAMLVAKWQSIGFCHG 314
              PSA   +   ++ ++  F I QYY  ++G  R  E    +V  RT  LVA WQ++GFCHG
Sbjct: 137150 PSA---SAPHVLGDLTRFVIDQYYPHLAGVERPVEALVLDVAARTGRLVAGWQTVGFCHG 137320

Query: 315    VLNTDNMSIVGDTLDYGPFGFMEHFDPKHICNTSDDRGRYRYEAQPEVCKWNCGVLADQL 374
              VLNTDNMSI+G T+DYGP+GF+EH++ +++CN SDD  RY Y AQPE+C WNC  LA+ L
Sbjct: 137321 VLNTDNMSILGLTIDYGPYGFLEHYNAQYVCNGSDDGARYTYGAQPEICAWNCCRLAESL 137500

Query: 375    GLVTERAGL----EPILESFDAVYEAEYMRLMREKLGLSD--EEKEDKMLVDTLFDVLAF 428
                + +  G     E +  +F A Y+ EY+  MREKLGL    E  E +    +LF+V   
Sbjct: 137501 RPLLDDEGASMSEEEVRNAFFAAYDDEYVARMREKLGLRPDVEPHEVRAYAKSLFEVFDA 137680

Query: 429    TGADFTCTFRYLSELDVFETGDCREQVLNKLVAVSETLAQQKRKLELDSGGVSDAQFDMV 488
              TGADFT TFR L+ L     G    ++  ++ +   T AQ +   +   G +SD +   V
Sbjct: 137681 TGADFTSTFRLLASL---HAGCNETELAARIASRCVTPAQLEAAAQ---GRISDEKIAAV 137842

Query: 489    VMLLQENPVRARQYGITPALVAQIKANREAKKLLDATTDEERMDSIRTVWVDWI-DVYIS 547
                LL   P       I P ++       E ++   A +  +++      W  ++   Y +
Sbjct: 137843 RQLLATAPHMLAH--IPPRVLQGELRKAEVRERARALSAYQKVADDTAAWQSYLTGPYAA 138016

Query: 548    RVKEQGDAASDADRRRRMLDVNPLFVLRNHVAQKAIDFAHEGDYDAVQHIFELVTNPFDE 607
               V E G  + +  R  +M   NP  V RN + Q AID A  GD+  V  + ++      +
Sbjct: 138017 MVAEAG--SDEPTRAAQMAAANPAQVPRNAILQAAIDAAESGDFALVDALVDV------D 138172

Query: 608    PTDDRDLEYARPQDSSTAPLCVSXSS 633
                DD  +      D +  P+ V+ SS
Sbjct: 138173 WFDDDAVAGLAGADGAVEPMVVT*SS 138250


>gb|GL349436.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.4,
              whole genome shotgun sequence
          Length = 664084

 Score =  336 bits (861), Expect = 3e-92
 Identities = 230/591 (38%), Positives = 309/591 (52%), Gaps = 14/591 (2%)
 Frame = +3

Query: 7      GSLSRSFSSWRRLPSSRFDNAVLRELPIDTEPKNFVRSAVSGACFSRVDPTPIASPELVV 66
              G   RS + W RL  S    A LR  P      +      + A F    PTP+ +P L  
Sbjct: 154290 GGGMRSPTPWLRLGPSAA--AALRTAPQAAPAPH------ADAHFVVTAPTPVEAPRLAA 154445

Query: 67     TSPNSLLLVGIELNESDSKSQDEGVNGEGDDLQPIETLVPILAGNTLLPGAETAAQCYCG 126
               S  +    G+EL +  + S D               +V +LAGN+L PGA   A  Y G
Sbjct: 154446 LSLPAWRAAGVELPDDPASSPD---------------VVDVLAGNSLPPGASPVAHVYAG 154580

Query: 127    HQFGFFSGQLGDGAALYLGEVVAVDER--WELQLKGSGLTPYSRTADGRKVLRSTLREFL 184
              HQFG FSGQLGDGAA+ LG  +A DER   ELQLKG+GLTP SR+ DGRKVLRS+LRE +
Sbjct: 154581 HQFGSFSGQLGDGAAMLLG-TIAGDERPPMELQLKGAGLTPCSRSGDGRKVLRSSLREMV 154757

Query: 185    CSENMHALGVPTTRAGSVVTSKETQVLRDIFYNGDAKMEPTAVVTRIAKSFLRFGSFEIF 244
               SE M AL VPTTR+GS+V S +T V+RDI Y+G    EP AV+TR+A SF RFGSFE+ 
Sbjct: 154758 ASEAMAALCVPTTRSGSLVIS-DTTVVRDINYDGRPAAEPAAVITRLAPSFFRFGSFELC 154934

Query: 245    KDEDKLTGLAGPSAHLENKEEMMREMLDFTIRQYYSEI-----SGARKYEKFFQEVVRRT 299
                 D  T  +GPS        ++ E+ D+ +  +++E+     S A +   +   V   T
Sbjct: 154935 LPPDPRTLRSGPS---HRSPHILTELFDYVVETHFAELAVHETSRAARVAAWLDHVAAST 155105

Query: 300    AMLVAKWQSIGFCHGVLNTDNMSIVGDTLDYGPFGFMEHFDPKHICNTSDDRGRYRYEAQ 359
                LVA WQ++GFCHGVLNTDNMSI G TLDYGPF FM  +DP++ CN SD  GRY Y AQ
Sbjct: 155106 GALVAHWQALGFCHGVLNTDNMSIHGITLDYGPFAFMGAYDPEYACNASDPTGRYSYAAQ 155285

Query: 360    PEVCKWNCGVLADQLG-LVTERAGLEPILESFDAVYEAEYMRLMREKLGLSDEEKEDKML 418
              PEVC WNC  LA+ L  L+    G + +  +F++ Y      L R KLGL+    +   L
Sbjct: 155286 PEVCAWNCIRLANALDPLLPADNGEDIVSNAFESAYSETLASLARRKLGLAPTAPQQVAL 155465

Query: 419    --VDTLFDVLAFTGADFTCTFRYLSELDVFETGDCREQVLNKLVA--VSETLAQQKRKLE 474
                 ++L   +A T AD+T TFR L             +  N+L A     T A ++  L+
Sbjct: 155466 DAFESLRATMAATAADYTATFRALG---------ATYRAPNELAAHLAETTCASREFLLD 155618

Query: 475    LDSGGVSDAQFDMVVMLLQENPVRARQYGITPALVAQIKANREAKKLLDA--TTDEERMD 532
               D+  V   Q D ++ L            + P L+      RE +KL      TD+++  
Sbjct: 155619 RDAPTVPSHQLDALLAL--------PNVQLPPGLLNAELRKRERRKLYAEAYATDDDKAK 155774

Query: 533    SIRTVWVDWIDVYISRVKEQGDAASDADRRRRMLDVNPLFVLRNHVAQKAI 583
              +   VW D++   ++ +  +      A R   M   NP  V  N + + AI
Sbjct: 155775 NDERVWYDFLTNTLAPLVAEHGLGDPAARMLAMNAANPWIVPHNWMLEAAI 155927


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,946,975
Number of Sequences: 131
Number of extensions: 348757
Number of successful extensions: 2312
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2139
Number of HSP's gapped (non-prelim): 463
length of query: 633
length of database: 9,560,209
effective HSP length: 106
effective length of query: 527
effective length of database: 9,546,323
effective search space: 5030912221
effective search space used: 5030912221
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)